Library Complementarity

Jaccard similarity was used as a distance metric to cluster libraries by transcript composition. Similarity $J_{AB}$ was calculated as the complement of complementarity, $1-C_{AB}$, as described in Section 3.3.4 and [32]. Other libraries used to calculate complementarity were described in Section 3.3.4, including the MHAM mycorrhizal root library (Harrison, unpublished), the DSIR Phytophthora medicaginis-infected root library (Vance, unpublished), KV0 axenic and KVnod nodulating root (pooled from KV1, KV2, and KV3) libraries (VandenBosch, unpublished), and Noble Foundation (NF) root, stem, leaf, and nodulating root libraries (May, unpublished).