Press

Hierarchical structure and prediction of missing links
Nature (May 2008, by Sid Redner), SFI Press Release (May 2008), Roland Piquepaille's Technology Trends (May 2008), Slashdot (May 2008), Science News (June 2008, by Julie Rehmeyer), BioEssays (July 2008, by Natali Gulbahce and Sune Lehmann).

Power-law distributions in empirical data
Nature Physics (May 2008, by Mark Buchanan), Wall Street Journal (July 2009, by Carl Bialik)

Patterns in Terrorism
Nature News (February 2005), PhysicsWeb (February 2005), Die Welt (March 2005; in German), Nature News (July 2005), The Economist (July 2005), The Guardian (August 2005), The Why Files (June 2006), American Physical Society (APS) Bulletin (November 2006), SFI Bulletin (Spring 2008), arxivblog (February 2009), arxivblog (June 2009), Neue Zuercher Zeitung (June 2009; in German), Schneier on Security (January 2010).

Evolution and distribution of species body size
LiveScience (July 2008, Clara Moskowitz), SFI Press Release (July 2008), Science News (July 2008).

Mapping the Internet
SIAM News (June 2005, by Sara Robinson)

Journal Publications

1. The performance of modularity maximization in practical contexts.
   B. H. Good, Y.-A. de Montjoye and A. Clauset.
   Submitted to Phys. Rev. E (2009).

2. The developmental dynamics of terrorist organizations.
   A. Clauset and K. S. Gleditsch.
   Submitted to PNAS (2009). (video presentation from summer 2009)

3. The Strategic Calculus of Terrorism: Substitution and Competition in the Israel-Palestine Conflict.
   A. Clauset, L. Heger, M. Young and K. S. Gleditsch.
   Cooperation & Conflict, to appear (2010).

4. A generalized aggregation-disintegration model for the frequency of
   severe terrorist attacks.
   A. Clauset and F. W. Wiegel.
   Journal of Conflict Resolution 54(1), 179-197 (2010).

5. Power-law distributions in empirical data.
   A. Clauset, C. R. Shalizi and M. E. J. Newman.
   SIAM Review 51(4), 661-703 (2009). (Download the code.)

6. On the Bias of Traceroute Sampling.
   D. Achlioptas, A. Clauset, D. Kempe and C. Moore.
   Journal of the ACM 56(4), article 21, 28 pages (2009). (link to ACM website)

7. Evolutionary Model of Species Body Mass Diversification.
   A. Clauset and S. Redner.
   Physical Review Letters 102, 038103 (2009).

8. How many species have mass M?
   A. Clauset, D. J. Schwab and S. Redner.
   American Naturalist 173, 256 - 263 (2009).

9. Controlling across complex networks - Emerging links between networks and control.
   A. Clauset, H. G. Tanner, C. T. Abdallah and R. H. Byrne.
   Annual Reviews in Control 32, 183 - 192 (2008).

10. The evolution and distribution of species body size.
    A. Clauset and D. H. Erwin.
    Science 321, 399 - 401 (2008). (free reprint via Science)

11. Hierarchical structure and the prediction of missing links in networks.
    A. Clauset, C. Moore and M. E. J. Newman.
    Nature 453, 98 - 101 (2008). (Download the code; Nature version)

12. On the Frequency of Severe Terrorist Attacks.
    A. Clauset, M. Young and K. S. Gledistch.
    Journal of Conflict Resolution 51(1), 58 - 88 (2007).
    (First pre-print appeared online as physics/0502014 in February 2005.)

13. Scale Invariance in Road Networks.
    V. Kalapala, V. Sanwalani, A. Clauset and C. Moore.
    Physical Review E 73, 026130 (2006).

14. Molecular modeling of mono- and bis-quaternary ammonium salts as ligands at the a4b2 nicotinic acetylcholine receptor subtype using nonlinear techniques.
    J. T. Ayers, A. Clauset, J. D. Schmitt, L. P. Dwoskin and P. A. Crooks.
    American Association of Pharmaceutical Scientists Journal 7(3), E678 - 85 (2005).

15. Supervised Self-Organizing Maps in QSAR I: Robust behavior with underdetermined datasets.
    Y. D. Xiao, A. Clauset, R. Harris, E. Bayram, P. Santago II, and J. D. Schmitt.
    Journal of Chemical Information and Modeling 45(6), 1749 - 1758 (2005).

16. Finding local community structure in networks.
    A. Clauset.
    Physical Review E 72, 026132 (2005).

17. Accuracy and Scaling Phenomena in Internet Mapping.
    A. Clauset and C. Moore.
    Physical Review Letters 94, 018701 (2005).

18. Finding community structure in very large networks.
    A. Clauset, M. E. J. Newman and C. Moore.
    Physical Review E 70, 066111 (2004). (Download the code.)

19. Genetic Algorithms and Self-Organizing Maps: A Powerful Combination for Modeling Complex QSAR and QSPR Problems.
    E. Bayram, P. Santago II, R. Harris, Y. D. Xiao, A. Clauset and J. D. Schmitt.
    Journal of Computer-Aided Molecular Design 18(7-9), 483 - 493 (2004).

Conference Proceedings

1. Location Segmentation, Inference and Prediction from Cellular Towers.
   N. Eagle, A. Clauset and J. Quinn.
   Proc. 23rd AAAI Conference on Artificial Intel ligence (AAAI '09).

2. Methodologies for Continuous Cellular Tower Data Analysis.
   N. Eagle, J. Quinn and A. Clauset.
   Proc. 7th International Conference on Pervasive Computing (Pervasive '09), 342 - 353.

3. Persistence and periodicity in a dynamic proximity network.
   A. Clauset and N. Eagle.
   DIMACS Workshop on Computational Methods for Dynamic Interaction Networks (Piscataway), 2007.

4. Structural Inference of Hierarchies in Networks.
   A. Clauset, C. Moore and M. E. J. Newman.
   In E. M. Airoldi et al. (Eds.): ICML 2006 Ws, Lecture Notes in Computer Science 4503, 1 - 13. Springer-Verlag, Berlin Heidelberg (2007).

5. On the bias of traceroute sampling; or, Power-law degree distributions in regular graphs.
   D. Achlioptas, A Clauset, D. Kempe and C. Moore.
   In Proc. 37th ACM Symposium on Theory of Computing (STOC) (Baltimore, May 2005).

Pre-prints

1. Comment on Yu et al., 'High Quality Binary Protein Interaction Map of the Yeast Interactome Network.' Science 322, 104 (2008).
   A. Clauset.
   E-print, arXiv:0901.0530 (2009).

2. How do networks become navigable?
   A. Clauset and C. Moore.
   E-print, arXiv:cond-mat/0309415 (2003).

3. Chaos You Can Play In.
   A. Clauset, N. Grigg, M. Lim and E. Miller.
   In Proc. 2003 Santa Fe Institute Complex Systems Summer School (Santa Fe, July 2003).